IL_6XZB_111

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6XZB|1|A2|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_111 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0661

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6XZB|1|A2|C|1319
6XZB|1|A2|C|1320
6XZB|1|A2|A|1321
6XZB|1|A2|A|1322
6XZB|1|A2|C|1323
*
6XZB|1|A2|G|1331
6XZB|1|A2|G|1332
6XZB|1|A2|G|1333

Current chains

Chain A2

23S rRNA

Nearby chains

Chain S2

50S ribosomal protein L22

Chain T2

50S ribosomal protein L23