IL_6XZB_116

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6XZB|1|A2|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_116 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.0775

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6XZB|1|A2|G|1432
6XZB|1|A2|A|1433
6XZB|1|A2|A|1434
6XZB|1|A2|G|1435
*
6XZB|1|A2|C|1557
6XZB|1|A2|C|1558
6XZB|1|A2|U|1559
6XZB|1|A2|G|1560
6XZB|1|A2|C|1561

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2