3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_120 not in the Motif Atlas
Homologous match to IL_5J7L_300
Geometric discrepancy: 0.1999
The information below is about IL_5J7L_300
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6XZB|1|A2|U|1474
6XZB|1|A2|G|1475
6XZB|1|A2|U|1476
6XZB|1|A2|A|1477
6XZB|1|A2|G|1478
*
6XZB|1|A2|U|1513
6XZB|1|A2|G|1514
6XZB|1|A2|A|1515
6XZB|1|A2|G|1516
6XZB|1|A2|G|1517

Current chains

Chain A2
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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