3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
6XZB|1|A2|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_170 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.0501
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6XZB|1|A2|G|2737
6XZB|1|A2|A|2738
6XZB|1|A2|U|2739
6XZB|1|A2|A|2740
6XZB|1|A2|A|2741
6XZB|1|A2|G|2742
*
6XZB|1|A2|C|2762
6XZB|1|A2|G|2763
6XZB|1|A2|A|2764
6XZB|1|A2|A|2765
6XZB|1|A2|A|2766
6XZB|1|A2|C|2767

Current chains

Chain A2
23S rRNA

Nearby chains

Chain G2
50S ribosomal protein L6
Chain J2
50S ribosomal protein L13
Chain e2
50S ribosomal protein L36

Coloring options:


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