IL_6XZB_179
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XZB_179 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0555
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XZB|1|B2|C|71
6XZB|1|B2|G|72
6XZB|1|B2|A|73
6XZB|1|B2|U|74
6XZB|1|B2|G|75
6XZB|1|B2|G|76
6XZB|1|B2|U|77
6XZB|1|B2|A|78
6XZB|1|B2|G|79
*
6XZB|1|B2|C|97
6XZB|1|B2|G|98
6XZB|1|B2|A|99
6XZB|1|B2|G|100
6XZB|1|B2|A|101
6XZB|1|B2|G|102
6XZB|1|B2|U|103
6XZB|1|B2|A|104
6XZB|1|B2|G|105
Current chains
- Chain B2
- 5S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain M2
- 50S ribosomal protein L16
- Chain V2
- 50S ribosomal protein L25
- Chain Z2
- 50S ribosomal protein L30
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