IL_6Y0G_025

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGUCG*CCGACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_025 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3736

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6Y0G|1|L5|G|491
6Y0G|1|L5|U|492
6Y0G|1|L5|G|493
6Y0G|1|L5|U|494
6Y0G|1|L5|C|495
6Y0G|1|L5|G|496
*
6Y0G|1|L5|C|657
6Y0G|1|L5|C|658
6Y0G|1|L5|G|659
6Y0G|1|L5|A|660
6Y0G|1|L5|C|661
6Y0G|1|L5|C|662

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18