IL_6Y0G_026

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCGG*CCCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_026 not in the Motif Atlas

Geometric match to IL_1L9A_002

Geometric discrepancy: 0.3495

The information below is about IL_1L9A_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6Y0G|1|L5|G|496
6Y0G|1|L5|G|497
6Y0G|1|L5|C|498
6Y0G|1|L5|G|499
6Y0G|1|L5|G|500
*
6Y0G|1|L5|C|654
6Y0G|1|L5|C|655
6Y0G|1|L5|C|656
6Y0G|1|L5|C|657

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4