IL_6Y0G_100

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6Y0G|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_100 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.1024

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6Y0G|1|L5|A|2850
6Y0G|1|L5|G|2851
6Y0G|1|L5|U|2852
6Y0G|1|L5|C|2853
6Y0G|1|L5|G|2854
6Y0G|1|L5|G|2855
*
6Y0G|1|L5|C|3837
6Y0G|1|L5|U|3838
6Y0G|1|L5|G|3839
6Y0G|1|L5|U|3840

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23