IL_6Y0G_110

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_110 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1872

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6Y0G|1|L5|U|3715
6Y0G|1|L5|C|3716
6Y0G|1|L5|A|3717
6Y0G|1|L5|A|3718
6Y0G|1|L5|A|3719
6Y0G|1|L5|G|3720
6Y0G|1|L5|U|3721
*
6Y0G|1|L5|A|3732
6Y0G|1|L5|A|3733
6Y0G|1|L5|U|3734
6Y0G|1|L5|G|3735
6Y0G|1|L5|A|3736
6Y0G|1|L5|A|3737
6Y0G|1|L5|G|3738

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36