IL_6Y0G_112

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6Y0G|1|L5|A|3785, 6Y0G|1|L5|C|3791, 6Y0G|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_112 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.091

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6Y0G|1|L5|C|3781
6Y0G|1|L5|C|3782
6Y0G|1|L5|A|3783
6Y0G|1|L5|A|3784
6Y0G|1|L5|A|3785
6Y0G|1|L5|U|3786
6Y0G|1|L5|G|3787
6Y0G|1|L5|C|3788
6Y0G|1|L5|C|3789
6Y0G|1|L5|U|3790
6Y0G|1|L5|C|3791
6Y0G|1|L5|G|3792
*
6Y0G|1|L5|C|3808
6Y0G|1|L5|G|3809
6Y0G|1|L5|C|3810
6Y0G|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA