IL_6Y0G_167

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_167 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.1968

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6Y0G|1|S2|G|23
6Y0G|1|S2|C|24
6Y0G|1|S2|A|25
*
6Y0G|1|S2|U|649
6Y0G|1|S2|A|650
6Y0G|1|S2|U|651

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23