IL_6Y0G_222
3D structure
- PDB id
- 6Y0G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome in classical-PRE state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGCC*GUCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y0G_222 not in the Motif Atlas
- Geometric match to IL_7A0S_040
- Geometric discrepancy: 0.2202
- The information below is about IL_7A0S_040
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6Y0G|1|S2|G|1269
6Y0G|1|S2|G|1270
6Y0G|1|S2|C|1271
6Y0G|1|S2|C|1272
*
6Y0G|1|S2|G|1510
6Y0G|1|S2|U|1511
6Y0G|1|S2|C|1512
6Y0G|1|S2|C|1513
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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