IL_6Y0G_237

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6Y0G|1|S2|C|1701, 6Y0G|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0G_237 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1892

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6Y0G|1|S2|C|1700
6Y0G|1|S2|C|1701
6Y0G|1|S2|G|1702
*
6Y0G|1|S2|C|1833
6Y0G|1|S2|A|1834
6Y0G|1|S2|A|1835
6Y0G|1|S2|G|1836

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain A4

mRNA

Chain B4

Transfer RNA; tRNA

Chain Sa

40S ribosomal protein S26