IL_6Y0Y_001

3D structure

PDB id

6Y0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Sarcin Ricin Loop, mutant C2666U

Experimental method

X-RAY DIFFRACTION

Resolution

0.95 Å

Loop

Sequence

CUAGUAC*GGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y0Y_001 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0933

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6Y0Y|1|A|C|2652
6Y0Y|1|A|U|2653
6Y0Y|1|A|A|2654
6Y0Y|1|A|G|2655
6Y0Y|1|A|U|2656
6Y0Y|1|A|A|2657
6Y0Y|1|A|C|2658
*
6Y0Y|1|A|G|2663
6Y0Y|1|A|G|2664
6Y0Y|1|A|A|2665
6Y0Y|1|A|A|2666
6Y0Y|1|A|C|2667
6Y0Y|1|A|G|2668

Current chains

Chain A

RNA (27-MER)

Nearby chains