IL_6Y2L_086

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_086 not in the Motif Atlas

Geometric match to IL_5T83_003

Geometric discrepancy: 0.2815

The information below is about IL_5T83_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

6Y2L|1|L5|A|2477
6Y2L|1|L5|C|2478
6Y2L|1|L5|G|2479
*
6Y2L|1|L5|C|2499
6Y2L|1|L5|U|2500

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LX

60S ribosomal protein L23a