IL_6Y2L_204

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_204 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2249

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6Y2L|1|S2|C|876
6Y2L|1|S2|C|877
6Y2L|1|S2|G|878
6Y2L|1|S2|C|879
*
6Y2L|1|S2|G|907
6Y2L|1|S2|A|908
6Y2L|1|S2|G|909
6Y2L|1|S2|G|910

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7