IL_6Y2L_260

3D structure

PDB id

6Y2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y2L_260 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1127

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6Y2L|1|L5|G|4400
6Y2L|1|L5|G|4401
6Y2L|1|L5|C|4402
6Y2L|1|L5|U|4403
*
6Y2L|1|L5|G|4440
6Y2L|1|L5|A|4441
6Y2L|1|L5|U|4442
6Y2L|1|L5|C|4443
6Y2L|1|L5|C|4444

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29