IL_6Y57_001

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6Y57|1|L8|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_001 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.3234

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6Y57|1|L5|C|6
6Y57|1|L5|C|7
*
6Y57|1|L8|G|149
6Y57|1|L8|C|150
6Y57|1|L8|G|151

Current chains

Chain L5

28S ribosomal RNA

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a