3D structure

PDB id
6Y57 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human ribosome in hybrid-PRE state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y57_043 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.2896
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_67427.1
Basepair signature
cWW-cWW-L-R-L-R-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6Y57|1|L5|G|1425
6Y57|1|L5|G|1426
6Y57|1|L5|A|1427
6Y57|1|L5|U|1428
6Y57|1|L5|C|1429
*
6Y57|1|L5|G|1455
6Y57|1|L5|C|1456
6Y57|1|L5|G|1457
6Y57|1|L5|C|1458
6Y57|1|L5|A|1459
6Y57|1|L5|C|1460

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LQ
60S ribosomal protein L18
Chain Lb
60S ribosomal protein L29

Coloring options:


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