IL_6Y57_073

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

6Y57|1|L5|C|1935, 6Y57|1|L5|A|2041, 6Y57|1|L5|U|2044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_073 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1973

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6Y57|1|L5|G|1933
6Y57|1|L5|A|1934
6Y57|1|L5|C|1935
6Y57|1|L5|C|1936
6Y57|1|L5|C|1937
6Y57|1|L5|C|1938
6Y57|1|L5|A|1939
6Y57|1|L5|G|1940
6Y57|1|L5|A|1941
6Y57|1|L5|A|1942
6Y57|1|L5|A|1943
6Y57|1|L5|A|1944
*
6Y57|1|L5|U|2038
6Y57|1|L5|G|2039
6Y57|1|L5|A|2040
6Y57|1|L5|A|2041
6Y57|1|L5|A|2042
6Y57|1|L5|A|2043
6Y57|1|L5|U|2044
6Y57|1|L5|G|2045
6Y57|1|L5|G|2046
6Y57|1|L5|A|2047
6Y57|1|L5|U|2048
6Y57|1|L5|G|2049
6Y57|1|L5|G|2050
6Y57|1|L5|C|2051
6Y57|1|L5|G|2052
6Y57|1|L5|C|2053

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a

Chain Lm

Ubiquitin-60S ribosomal protein L40