IL_6Y57_102

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6Y57|1|L5|A|3663, 6Y57|1|L5|U|3679, 6Y57|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_102 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0892

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6Y57|1|L5|C|3660
6Y57|1|L5|G|3661
6Y57|1|L5|A|3662
6Y57|1|L5|A|3663
6Y57|1|L5|G|3664
6Y57|1|L5|G|3665
*
6Y57|1|L5|U|3677
6Y57|1|L5|G|3678
6Y57|1|L5|U|3679
6Y57|1|L5|U|3680
6Y57|1|L5|G|3681
6Y57|1|L5|A|3682
6Y57|1|L5|C|3683
6Y57|1|L5|G|3684

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA