IL_6Y57_138

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6Y57|1|L5|U|4634, 6Y57|1|L5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_138 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2497

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6Y57|1|L5|U|4632
6Y57|1|L5|G|4633
6Y57|1|L5|U|4634
6Y57|1|L5|A|4635
6Y57|1|L5|U|4636
6Y57|1|L5|G|4637
*
6Y57|1|L5|C|4662
6Y57|1|L5|G|4663
6Y57|1|L5|A|4664
6Y57|1|L5|A|4665
6Y57|1|L5|G|4666

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31