IL_6Y57_142

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGGAGC*GAACCU

Length

13 nucleotides

Bulged bases

6Y57|1|L5|C|4741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_142 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3595

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6Y57|1|L5|G|4740
6Y57|1|L5|C|4741
6Y57|1|L5|G|4742
6Y57|1|L5|G|4743
6Y57|1|L5|A|4744
6Y57|1|L5|G|4745
6Y57|1|L5|C|4746
*
6Y57|1|L5|G|4954
6Y57|1|L5|A|4955
6Y57|1|L5|A|4956
6Y57|1|L5|C|4957
6Y57|1|L5|C|4958
6Y57|1|L5|U|4959

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lf

60S ribosomal protein L35a