IL_6Y57_148

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

6Y57|1|L5|C|4900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_148 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.2443

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6Y57|1|L5|G|4898
6Y57|1|L5|G|4899
6Y57|1|L5|C|4900
6Y57|1|L5|G|4901
*
6Y57|1|L5|C|4920
6Y57|1|L5|C|4921
6Y57|1|L5|C|4922

Current chains

Chain L5

28S ribosomal RNA

Nearby chains