IL_6Y57_255

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6Y57|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_255 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0768

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6Y57|1|L5|G|2847
6Y57|1|L5|G|2848
6Y57|1|L5|A|2849
6Y57|1|L5|A|2850
6Y57|1|L5|G|2851
6Y57|1|L5|U|2852
6Y57|1|L5|C|2853
6Y57|1|L5|G|2854
6Y57|1|L5|G|2855
*
6Y57|1|L5|C|3837
6Y57|1|L5|U|3838
6Y57|1|L5|G|3839
6Y57|1|L5|U|3840
6Y57|1|L5|C|3841

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23