IL_6Y57_260

3D structure

PDB id

6Y57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in hybrid-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6Y57|1|S2|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y57_260 not in the Motif Atlas

Homologous match to IL_8C3A_407

Geometric discrepancy: 0.2274

The information below is about IL_8C3A_407

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

6Y57|1|S2|G|312
6Y57|1|S2|A|313
6Y57|1|S2|U|314
6Y57|1|S2|C|315
*
6Y57|1|S2|G|335
6Y57|1|S2|A|336
6Y57|1|S2|C|337

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6