IL_6Y69_016

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6Y69|1|A|G|801, 6Y69|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y69_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0761

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6Y69|1|A|G|674
6Y69|1|A|A|675
6Y69|1|A|A|676
6Y69|1|A|A|677
6Y69|1|A|C|678
*
6Y69|1|A|G|799
6Y69|1|A|A|800
6Y69|1|A|G|801
6Y69|1|A|A|802
6Y69|1|A|U|803
6Y69|1|A|A|804
6Y69|1|A|G|805
6Y69|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15