IL_6Y69_182

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y69_182 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0893

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6Y69|1|A|U|1851
6Y69|1|A|U|1852
6Y69|1|A|A|1853
6Y69|1|A|A|1854
6Y69|1|A|U|1855
6Y69|1|A|U|1856
6Y69|1|A|G|1857
6Y69|1|A|A|1858
6Y69|1|A|U|1859
6Y69|1|A|G|1860
*
6Y69|1|A|U|1882
6Y69|1|A|U|1883
6Y69|1|A|G|1884
6Y69|1|A|A|1885
6Y69|1|A|U|1886
6Y69|1|A|C|1887
6Y69|1|A|G|1888
6Y69|1|A|A|1889
6Y69|1|A|A|1890
6Y69|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA