IL_6Y6X_007

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

6Y6X|1|L5|G|119, 6Y6X|1|L5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_007 not in the Motif Atlas

Geometric match to IL_8GLP_287

Geometric discrepancy: 0.1338

The information below is about IL_8GLP_287

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

6Y6X|1|L5|C|118
6Y6X|1|L5|G|119
6Y6X|1|L5|A|120
6Y6X|1|L5|A|121
6Y6X|1|L5|U|122
*
6Y6X|1|L5|A|147
6Y6X|1|L5|C|148
6Y6X|1|L5|A|149
6Y6X|1|L5|U|150
6Y6X|1|L5|G|151
6Y6X|1|L5|U|152
6Y6X|1|L5|G|153

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35