3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGAAU*ACAUGUG
Length
12 nucleotides
Bulged bases
6Y6X|1|L5|G|119, 6Y6X|1|L5|U|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y6X|1|L5|C|118
6Y6X|1|L5|G|119
6Y6X|1|L5|A|120
6Y6X|1|L5|A|121
6Y6X|1|L5|U|122
*
6Y6X|1|L5|A|147
6Y6X|1|L5|C|148
6Y6X|1|L5|A|149
6Y6X|1|L5|U|150
6Y6X|1|L5|G|151
6Y6X|1|L5|U|152
6Y6X|1|L5|G|153

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LG
60S ribosomal protein L7a
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35

Coloring options:

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