3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
6Y6X|1|L5|C|340
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_015 not in the Motif Atlas
Geometric match to IL_7RQB_073
Geometric discrepancy: 0.2432
The information below is about IL_7RQB_073
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_88739.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

6Y6X|1|L5|C|339
6Y6X|1|L5|C|340
6Y6X|1|L5|G|341
6Y6X|1|L5|G|342
*
6Y6X|1|L8|C|32
6Y6X|1|L8|G|33

Current chains

Chain L5
28S ribosomal RNA
Chain L8
5.8S ribosomal RNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LL
60S ribosomal protein L13
Chain LN
60S ribosomal protein L15
Chain Lj
60S ribosomal protein L37

Coloring options:


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