3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAU*AC
Length
5 nucleotides
Bulged bases
6Y6X|1|L5|A|509
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_030 not in the Motif Atlas
Geometric match to IL_2VPL_002
Geometric discrepancy: 0.228
The information below is about IL_2VPL_002
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_14190.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
134

Unit IDs

6Y6X|1|L5|G|508
6Y6X|1|L5|A|509
6Y6X|1|L5|U|510
*
6Y6X|1|L5|A|649
6Y6X|1|L5|C|650

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain La
60S ribosomal protein L27a

Coloring options:


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