IL_6Y6X_047

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCG*CG

Length

5 nucleotides

Bulged bases

6Y6X|1|L5|C|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_047 not in the Motif Atlas

Geometric match to IL_4LFB_007

Geometric discrepancy: 0.3181

The information below is about IL_4LFB_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_75289.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6Y6X|1|L5|U|1100
6Y6X|1|L5|C|1167
6Y6X|1|L5|G|1168
*
6Y6X|1|L5|C|1193
6Y6X|1|L5|G|1194

Current chains

Chain L5

28S ribosomal RNA

Nearby chains