IL_6Y6X_075

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGG*UCA

Length

7 nucleotides

Bulged bases

6Y6X|1|L5|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_075 not in the Motif Atlas

Geometric match to IL_1L9A_007

Geometric discrepancy: 0.2986

The information below is about IL_1L9A_007

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6Y6X|1|L5|U|1756
6Y6X|1|L5|U|1757
6Y6X|1|L5|G|1758
6Y6X|1|L5|G|1759
*
6Y6X|1|L5|U|1773
6Y6X|1|L5|C|1774
6Y6X|1|L5|A|1775

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like