3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UUAAG*CCAUA
Length
10 nucleotides
Bulged bases
6Y6X|1|L5|U|2070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_079 not in the Motif Atlas
Homologous match to IL_8C3A_051
Geometric discrepancy: 0.0826
The information below is about IL_8C3A_051
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6Y6X|1|L5|U|1905
6Y6X|1|L5|U|1906
6Y6X|1|L5|A|1907
6Y6X|1|L5|A|1908
6Y6X|1|L5|G|1909
*
6Y6X|1|L5|C|2067
6Y6X|1|L5|C|2068
6Y6X|1|L5|A|2069
6Y6X|1|L5|U|2070
6Y6X|1|L5|A|2071

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LF
60S ribosomal protein L7
Chain LQ
60S ribosomal protein L18
Chain Le
60S ribosomal protein L32
Chain Lf
60S ribosomal protein L35a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.8479 s