3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGAAC*GAA
Length
8 nucleotides
Bulged bases
6Y6X|1|L5|A|2428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_096 not in the Motif Atlas
Geometric match to IL_7A0S_047
Geometric discrepancy: 0.1804
The information below is about IL_7A0S_047
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_06671.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
10

Unit IDs

6Y6X|1|L5|U|2415
6Y6X|1|L5|G|2416
6Y6X|1|L5|A|2417
6Y6X|1|L5|A|2418
6Y6X|1|L5|C|2419
*
6Y6X|1|L5|G|2427
6Y6X|1|L5|A|2428
6Y6X|1|L5|A|2429

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ll
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1284 s