3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
6Y6X|1|L5|A|2512, 6Y6X|1|L5|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_097 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.0769
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6Y6X|1|L5|C|2446
6Y6X|1|L5|U|2447
6Y6X|1|L5|G|2448
6Y6X|1|L5|A|2449
6Y6X|1|L5|G|2450
*
6Y6X|1|L5|C|2509
6Y6X|1|L5|G|2510
6Y6X|1|L5|A|2511
6Y6X|1|L5|A|2512
6Y6X|1|L5|A|2513
6Y6X|1|L5|G|2514

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LA
60S ribosomal protein L8
Chain Lg
60S ribosomal protein L34
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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