IL_6Y6X_112

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6Y6X|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_112 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.075

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6Y6X|1|L5|C|2867
6Y6X|1|L5|G|2868
6Y6X|1|L5|U|2869
6Y6X|1|L5|A|2870
6Y6X|1|L5|A|2871
6Y6X|1|L5|C|2872
*
6Y6X|1|L5|G|2877
6Y6X|1|L5|G|2878
6Y6X|1|L5|A|2879
6Y6X|1|L5|U|2880
6Y6X|1|L5|A|2881
6Y6X|1|L5|A|2882
6Y6X|1|L5|G|2883

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a