IL_6Y6X_123

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y6X_123 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1891

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6Y6X|1|L5|U|3715
6Y6X|1|L5|C|3716
6Y6X|1|L5|A|3717
6Y6X|1|L5|A|3718
6Y6X|1|L5|A|3719
6Y6X|1|L5|G|3720
6Y6X|1|L5|U|3721
*
6Y6X|1|L5|A|3732
6Y6X|1|L5|A|3733
6Y6X|1|L5|U|3734
6Y6X|1|L5|G|3735
6Y6X|1|L5|A|3736
6Y6X|1|L5|A|3737
6Y6X|1|L5|G|3738

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a