IL_6Y6X_125
3D structure
- PDB id
- 6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracenomycin X bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 6Y6X|1|L5|A|3785, 6Y6X|1|L5|C|3791, 6Y6X|1|L5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y6X_125 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0727
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6Y6X|1|L5|C|3781
6Y6X|1|L5|C|3782
6Y6X|1|L5|A|3783
6Y6X|1|L5|A|3784
6Y6X|1|L5|A|3785
6Y6X|1|L5|U|3786
6Y6X|1|L5|G|3787
6Y6X|1|L5|C|3788
6Y6X|1|L5|C|3789
6Y6X|1|L5|U|3790
6Y6X|1|L5|C|3791
6Y6X|1|L5|G|3792
*
6Y6X|1|L5|C|3808
6Y6X|1|L5|G|3809
6Y6X|1|L5|C|3810
6Y6X|1|L5|G|3811
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
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