3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CCAAAUGCCUCG*CGCG
Length
16 nucleotides
Bulged bases
6Y6X|1|L5|A|3785, 6Y6X|1|L5|C|3791, 6Y6X|1|L5|C|3810
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_125 not in the Motif Atlas
Homologous match to IL_8C3A_095
Geometric discrepancy: 0.0727
The information below is about IL_8C3A_095
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_66080.1
Basepair signature
cWW-cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6Y6X|1|L5|C|3781
6Y6X|1|L5|C|3782
6Y6X|1|L5|A|3783
6Y6X|1|L5|A|3784
6Y6X|1|L5|A|3785
6Y6X|1|L5|U|3786
6Y6X|1|L5|G|3787
6Y6X|1|L5|C|3788
6Y6X|1|L5|C|3789
6Y6X|1|L5|U|3790
6Y6X|1|L5|C|3791
6Y6X|1|L5|G|3792
*
6Y6X|1|L5|C|3808
6Y6X|1|L5|G|3809
6Y6X|1|L5|C|3810
6Y6X|1|L5|G|3811

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain Ln
60S ribosomal protein L41

Coloring options:


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