3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GACC*GC
Length
6 nucleotides
Bulged bases
6Y6X|1|L5|C|4349
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Y6X_137 not in the Motif Atlas
Geometric match to IL_5J7L_032
Geometric discrepancy: 0.1796
The information below is about IL_5J7L_032
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

6Y6X|1|L5|G|4347
6Y6X|1|L5|A|4348
6Y6X|1|L5|C|4349
6Y6X|1|L5|C|4350
*
6Y6X|1|L5|G|4364
6Y6X|1|L5|C|4365

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain LQ
60S ribosomal protein L18
Chain La
60S ribosomal protein L27a
Chain Lo
60S ribosomal protein L36a

Coloring options:


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