IL_6Y6X_168
3D structure
- PDB id
- 6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracenomycin X bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGG*CAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y6X_168 not in the Motif Atlas
- Geometric match to IL_3IVK_002
- Geometric discrepancy: 0.1213
- The information below is about IL_3IVK_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
6Y6X|1|L5|G|4992
6Y6X|1|L5|G|4993
6Y6X|1|L5|G|4994
*
6Y6X|1|L5|C|5057
6Y6X|1|L5|A|5058
6Y6X|1|L5|C|5059
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain Ld
- 60S ribosomal protein L31
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