IL_6Y7C_010

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_010 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1259

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6Y7C|1|2|U|117
6Y7C|1|2|U|118
6Y7C|1|2|A|119
6Y7C|1|2|U|120
6Y7C|1|2|U|121
6Y7C|1|2|U|122
*
6Y7C|1|2|A|295
6Y7C|1|2|U|296
6Y7C|1|2|U|297
6Y7C|1|2|C|298
6Y7C|1|2|A|299

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain I

40S ribosomal protein S8-A