IL_6Y7C_014

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6Y7C|1|2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_014 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.262

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6Y7C|1|2|G|204
6Y7C|1|2|U|205
6Y7C|1|2|A|206
*
6Y7C|1|2|U|259
6Y7C|1|2|U|260
6Y7C|1|2|U|261
6Y7C|1|2|U|262
6Y7C|1|2|C|263

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain I

40S ribosomal protein S8-A