IL_6Y7C_027

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUAC*GUAAUUG

Length

13 nucleotides

Bulged bases

6Y7C|1|2|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_027 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.393

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6Y7C|1|2|C|479
6Y7C|1|2|G|480
6Y7C|1|2|A|481
6Y7C|1|2|U|482
6Y7C|1|2|A|483
6Y7C|1|2|C|484
*
6Y7C|1|2|G|503
6Y7C|1|2|U|504
6Y7C|1|2|A|505
6Y7C|1|2|A|506
6Y7C|1|2|U|507
6Y7C|1|2|U|508
6Y7C|1|2|G|509

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A

Chain i

Essential nuclear protein 1