IL_6Y7C_043

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACG*CGUUU

Length

9 nucleotides

Bulged bases

6Y7C|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_043 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.3804

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6Y7C|1|2|G|868
6Y7C|1|2|A|869
6Y7C|1|2|C|870
6Y7C|1|2|G|871
*
6Y7C|1|2|C|956
6Y7C|1|2|G|957
6Y7C|1|2|U|958
6Y7C|1|2|U|959
6Y7C|1|2|U|960

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A

Chain b

40S ribosomal protein S27-A