IL_6Y7C_047

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6Y7C|1|2|G|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_047 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.5008

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6Y7C|1|2|U|893
6Y7C|1|2|U|894
6Y7C|1|2|G|895
6Y7C|1|2|U|896
6Y7C|1|2|C|897
6Y7C|1|2|A|898
6Y7C|1|2|G|899
*
6Y7C|1|2|C|910
6Y7C|1|2|U|911
6Y7C|1|2|U|912
6Y7C|1|2|G|913
6Y7C|1|2|G|914
6Y7C|1|2|A|915
6Y7C|1|2|U|916
6Y7C|1|2|U|917
6Y7C|1|2|U|918
6Y7C|1|2|A|919

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S14-A