IL_6Y7C_055

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAA*UUUG

Length

9 nucleotides

Bulged bases

6Y7C|1|2|G|1150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_055 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2968

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6Y7C|1|2|C|1148
6Y7C|1|2|G|1149
6Y7C|1|2|G|1150
6Y7C|1|2|A|1151
6Y7C|1|2|A|1152
*
6Y7C|1|2|U|1626
6Y7C|1|2|U|1627
6Y7C|1|2|U|1628
6Y7C|1|2|G|1629

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain h

Pre-rRNA-processing protein PNO1

Chain l

Serine/threonine-protein kinase RIO2