IL_6Y7C_067

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCAGCGAG*CUUGUGAAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|G|1480
6Y7C|1|2|C|1481
6Y7C|1|2|C|1482
6Y7C|1|2|A|1483
6Y7C|1|2|G|1484
6Y7C|1|2|C|1485
6Y7C|1|2|G|1486
6Y7C|1|2|A|1487
6Y7C|1|2|G|1488
*
6Y7C|1|2|C|1518
6Y7C|1|2|U|1519
6Y7C|1|2|U|1520
6Y7C|1|2|G|1521
6Y7C|1|2|U|1522
6Y7C|1|2|G|1523
6Y7C|1|2|A|1524
6Y7C|1|2|A|1525
6Y7C|1|2|A|1526
6Y7C|1|2|C|1527

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain T

40S ribosomal protein S19-A

Chain U

40S ribosomal protein S20

Chain Z

40S ribosomal protein S25-A