IL_6Y7C_068
3D structure
- PDB id
- 6Y7C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 6Y7C|1|2|C|1490, 6Y7C|1|2|U|1491, 6Y7C|1|2|A|1492, 6Y7C|1|2|A|1493, 6Y7C|1|2|U|1514, 6Y7C|1|2|A|1516
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Y7C_068 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.4865
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6Y7C|1|2|G|1488
6Y7C|1|2|U|1489
6Y7C|1|2|C|1490
6Y7C|1|2|U|1491
6Y7C|1|2|A|1492
6Y7C|1|2|A|1493
6Y7C|1|2|C|1494
*
6Y7C|1|2|G|1513
6Y7C|1|2|U|1514
6Y7C|1|2|A|1515
6Y7C|1|2|A|1516
6Y7C|1|2|U|1517
6Y7C|1|2|C|1518
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S16-A
- Chain T
- 40S ribosomal protein S19-A
- Chain U
- 40S ribosomal protein S20
- Chain i
- Essential nuclear protein 1
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