IL_6Y7C_075

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAU*GAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Y7C_075 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.3229

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6Y7C|1|2|C|1653
6Y7C|1|2|G|1654
6Y7C|1|2|A|1655
6Y7C|1|2|U|1656
*
6Y7C|1|2|G|1745
6Y7C|1|2|A|1746
6Y7C|1|2|G|1747

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain t

Ribosome biogenesis protein TSR1